Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs35336335 chr16:5002919 T/C 4.86E-5 474 31.27 29.63 27.77 KM Plot
PRAD rs35355477 chr17:62973009 C/T 1.03E-8 485 30.93 31.37 19.63 KM Plot
PRAD rs35385829 chr2:178793713 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35403482 chr2:178802233 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35404128 chr2:178797611 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35411998 chr13:20194442 C/T 3.0E-5 481 31 31.3 22.67 KM Plot
PRAD rs35417365 chr5:138340936 TAAAA/T 0.00011 490 32.77 29.98 28.73 KM Plot
PRAD rs35424224 chr19:53159625 A/T 2.11E-12 490 30.9 30.85 22.87 KM Plot
PRAD rs35433992 chr16:84141550 A/G 5.49E-5 481 31 29.28 28.77 KM Plot
PRAD rs35443996 chr5:179037375 C/G 1.7E-12 485 30.73 35.8 18.88 KM Plot
PRAD rs35444681 chr17:62991863 G/A 1.04E-8 481 30.87 31.62 19.63 KM Plot
PRAD rs35450581 chr5:171736693 C/T 0.000165 478 28.85 33.42 27.43 KM Plot
PRAD rs35486581 chr16:5003586 A/G 4.55E-5 475 31.35 29.63 27.77 KM Plot
PRAD rs35501390 chr10:99415457 AAG/A 3.79E-9 486 31.37 29.28 24.67 KM Plot
PRAD rs35508139 chr9:72843934 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot